Suggested Reading

ATAC

ATAC paper

ATAC Published Protocol

 

Chromatin

Chromatin organization- form to function

Mechanisms by which transcription factors gain access to target sequence elements in chromatin

Alterations to chromatin in intestinal macrophages link IL-10 deficiency to inappropriate inflammatory responses

 

FAIRE

FAIRE paper

FAIRE Nature Protocol

 

IBD

Inherited determinants of Crohn’s disease and ulcerative colitis phenotypes- a genetic association study

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

Interactions between Intestinal Microbiota and Host Immune Response in Inflammatory Bowel Disease

RNF20 and RNF40 regulate vitamin D receptor- dependent signaling in inflammatory bowel disease

A machine learning approarch identifies 5-ASA and ulceratie colitis as being linked with higher COVID-19 mortality in patients with IBD

Increased colonic expression of ACE2 associates with poor prognosis in Crohn’s disease

MicroRNA

The emerging role of miRNAs in inflammatory bowel disease- a review

MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn’s Disease and May Have Prognostic Utility

MicroRNAs and the regulation of intestinal homeostasis

MicroRNAs- Biogenesis and Molecular Functions

MicroRNAs- Target Recognition and Regulatory Functions

Therapeutic targeting of microRNAs- current status and future challenges

 

Other

How to meet with your advisor

Latent Enhancers Activated by Stimulation in Differentiated Cells